PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0349s0014.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 205aa    MW: 21462 Da    PI: 8.3719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0349s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-18103151355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    r  r++lg+f ta+eAa a+++a+ k++g
  Kalax.0349s0014.1.p 103 YRGVRQRP-SGKWAAEIRDPR----ReMRVWLGTFETAQEAALAYDRAAVKFHG 151
                          9*******.7*********82....47************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575130No hitNo description
SuperFamilySSF541716.21E-21102159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-29102158IPR001471AP2/ERF domain
PfamPF008474.3E-12102151IPR001471AP2/ERF domain
PROSITE profilePS5103222.84102159IPR001471AP2/ERF domain
SMARTSM003805.0E-33102165IPR001471AP2/ERF domain
CDDcd000182.50E-28103158No hitNo description
PRINTSPR003671.0E-9103114IPR001471AP2/ERF domain
PRINTSPR003671.0E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTRLTPEQEM AAMVASLTHV VTGGYGSTSC NSGPFSAADS ACQICKVVRE CLGCGLSDFA  60
PPFDSGGQPV NEGSAPEVDG EGRNEAGNNG GSKKKRKKNN NNYRGVRQRP SGKWAAEIRD  120
PRREMRVWLG TFETAQEAAL AYDRAAVKFH GLRAKLNFIY PDTSATHCRS APPIAAQAVV  180
IPDQGASANA AEGGAGDGIM GMRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20101158462ATERF1
3gcc_A2e-20101158462ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-28related to AP2 6l